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Journal Articles


Towards endoscopic ultrafast laser microsurgery of vocal folds

Christopher L. Hoy, W. Neil Everett, Murat Yildirim, James Kobler, Steven M. Zeitels, Adela Ben-Yakar, “Towards endoscopic ultrafast laser microsurgery of vocal folds,” Journal of Biomedical Optics 17, 038002 (2012). icon_pdf

 
Optical design and imaging performance testing of a 9.6-mm diameter femtosecond laser microsurgery probe

Christopher L. Hoy, Onur Ferhanoglu, Murat Yildirim, Wibool Piyawattanametha, Hyejun Ra, Olav Solgaard, and Adela Ben-Yakar, “Optical design and imaging performance testing of a 9.6-mm diameter femtosecond laser microsurgery probe ,” Optics Express 19, 10536 - 10552 (2011). icon_pdf

DOI: 10.1364/OE.19.010536

Read more...
 
Axonal regeneration proceeds through specific axonal fusion in transected C. elegans neurons

Neumann, B., Nguyen, K.C., Hall, D.H., Ben-Yakar, A., and Hilliard, M.C., “Axonal regeneration proceeds through specific axonal fusion in transected C. elegans neurons,” Developmental Dynamics 240, 1365-1372 (2011). icon_pdf

  • This article made the cover of the June 14 issue of Developmental Dynamics. See the cover  here .
 
Role of near-field enhancement in plasmonic laser nanoablation using gold nanorods on a silicon substrate: reply

Harrison, R.K. and Ben-Yakar, A.,“Role of near-field enhancement in plasmonic laser nanoablation using gold nanorods on a silicon substrate: reply,” Optics Express 19, 6177-6181 (2011). icon_pdf

  • This reply was submitted as a stand-alone response to a comment regarding our previously published article. Link
 
Fast-updating and nonrepeating Lissajous image reconstruction method for capturing increased dynamic information

C.L. Hoy, N.J. Durr, and Adela Ben-Yakar, “Fast-updating and nonrepeating Lissajous image reconstruction method for capturing increased dynamic information,” Applied Optics 50, 2376 - 2382 (2011). icon_pdf

 
Maximum imaging depth of two-photon autofluorescence microscopy in epithelial tissues

Durr, N.J., Weisspfennig, C.T., Holfeld, B.A., and Ben-Yakar, A., "Maximum imaging depth of two-photon autofluorescence microscopy in epithelial tissues," Journal of Biomedical Optics16(2), 026008  (2011). icon_pdf

  •  This article has been selected for the March 2011 issue of the Virtual Journal of Ultrafast Science, which highlights selected published articles from a wide range of journals to focus on cutting-edge research.
 
Role of near-field enhancement in plasmonic laser nanoablation using gold nanorods on a silicon substrate

Harrison, R.K. and Ben-Yakar, A.,“Role of near-field enhancement in plasmonic laser nanoablation using gold nanorods on a silicon substrate,” Optics Express 18, 22556-22571 (2010). icon_pdf

  • A comment regarding this article and our reply have been published in Optics Express. Link
 
Microfluidic tools for the analysis of behavior and neural cell physiology in worms

Ben-Yakar, A., Chronis, N., and Hang Lu, "Microfluidic tools for the analysis of behavior and neural cell physiology in worms," Invited Review for Current Opinion in Neurobiology, 19, 561-567 (2009).  icon_pdf 

 
Ultrafast laser surgery in microfluidics for genome-wide screenings

Ben-Yakar, A. and Bourgeois, F., “Ultrafast laser surgery in microfluidics for genome-wide screenings,” Invited Review Paper, Current Opinion in Biotechnology, 20, 100-105 (2009). icon_pdf 

 
CO2 and compressive immobilization of C. elegans on-chip

Chokshi, T., Ben-Yakar, A., and Chronis, N., “CO2 and compressive immobilization of C. elegans on-chip,” Lab on a Chip 9, 151-157 (2009). icon_pdf

 
Femtosecond laser nanoablation of glass in the near-field of single wall carbon nanotube bundles

Guo, S.X. and Ben-Yakar, A., “Femtosecond laser nanoablation of glass in the near-field of single wall carbon nanotube bundles,” Journal of Physics D: Applied Physics, 41, 185306-185313 (2008). icon_pdf

 
Thermal analysis of gold nanorods heated with femtosecond laser pulses

Ekici, O., Harrison, R.K., Durr, N.J., Eversole, D.S., and Ben-Yakar, A., "Thermal analysis of gold nanorods heated with femtosecond laser pulses," Journal of Physics D: Applied Physics, 41, 185501-185512 (2008). icon_pdf

  • The paper has been selected as one of the highlights of the articles published in Journal of Physics D: Applied Physics in 2008.
 
Femtosecond laser nanoaxotomy lab-on-a-chip for in vivo nerve regeneration studies

Guo, S.X., Bourgeois, F., Chokshi, T., Durr, N.J., Hilliard, M.A., Chronis, N., and Ben-Yakar, A., "Femtosecond laser nanoaxotomy lab-on-a-chip for in vivo nerve regeneration studies," Nature Methods5(6), 531-533 (2008). icon_pdf

  • Commentary article about our work was written by Jeffrey Perkel, "Microfluidics- Bringing New Things to Life Science," published in Science, Nov. 7, 2008. Read Commentary
  • News and Views article describing our work as pioneering was written by our colleagues S.E. Hulme, S.S. Shevkoplyas, and A. Samuel, "Microfluidics: streamlining discovery in worm biology," Nature Methods 5 (7), 589-590, July (2008). Read Commentary

  • Commentary article "Worm-on-a-chip boosts understanding of nerves" appeared in New Scientist, April 21, 2008. Read Commentary

  • Commentary article by Roger Highfield "Scientists invent microscopic operating table for 1-mm worm,"Telegraph.uk.com, April 13, 2008. Read Commentary

 
Miniaturized probe for femtosecond laser microsurgery and two-photon imaging

Hoy, C.L., Durr, N.J., Chen, P., Piyawattanametha, W., Ra, H., Solgaard, O., and Ben-Yakar, A., "Miniaturized probe for femtosecond laser microsurgery and two-photon imaging", Optics Express, 16 (13), 9996 -10005 (2008). icon_pdf

 

Commentary articles appeared in:

Interview by Emily Donahue “Laser Scalpel Holds Promise For Precise Surgery” aired by KUT 90.5 Austin on July 02, 2008. Listen to Interview

 
Ultrasound measurements of cavitation bubble radius for femtosecond laser-induced breakdown in water

Aglyamov, S.R., Karpiouk, A.B., Bourgeois, F., Ben-Yakar, A., and Emelianov, S.Y., “Ultrasound measurements of cavitation bubble radius for femtosecond laser-induced breakdown in water,” Optics Letters 33 (12), 1357-1359 (2008). icon_pdf

 
Quantitive ultrasound method to detect and monitor laser-induced cavitation bubbles

Karpiouk, A.B., Aglyamov, S.R., Bourgeois, F., Ben-Yakar, A., and Emelianov, S.Y., "Quantitive ultrasound method to detect and monitor laser-induced cavitation bubbles," J. Biomed. Optics 13(3), 034011 (2008). icon_pdf

 
Plasmonic laser nanoablation of silicon by the scattering of ultrafast pulses near gold nanospheres

Eversole, D.S., Luk’yanchuk, B., and Ben-Yakar, A., “Plasmonic laser nanoablation of silicon by the scattering of ultrafast pulses near gold nanospheres,” Invited Paper, Applied Physics A, 89, 283–291 (2007). icon_pdf

 
Femtosecond laser nanoaxotomy properties and their effect on axonal recovery in C. elegans

 Bourgeois, F. and Ben-Yakar, A., “Femtosecond laser nanoaxotomy properties and their effect on axonal recovery in C. elegans," Optics Express, 15 (14), 8521-8531 (2007). icon_pdf 

 
Two-photon luminescence imaging of cancer cells using molecularly targeted gold nanorods

Durr, N.J., Larson, T., Smith, D.K., Korgel, B.A., Sokolov, K., and Ben-Yakar, A., “Two-photon luminescence imaging of cancer cells using molecularly targeted gold nanorods," Nano Letters, 7 (4), 941-945 (2007). icon_pdf

  • This article is one of the most-accessed articles published in Nano Letters in 2007.
  • Commentary article by G. Boas, “Gold nanorods attract attention” Biophotonics International Magazine, p. 49-50, May 2007.
 
Thermal and fluid processes of a thin melt zone during femtosecond laser ablation of glass: the formation of rims by single laser pulses

Ben-Yakar, A., Harkin, A., Ashmore, J., Byer, R., and Stone, H., "Thermal and fluid processes of a thin melt zone during femtosecond laser ablation of glass: the formation of rims by single laser pulses," Journal of Physics D: Applied Physics, 40, 1447–1459 (2007). icon_pdf

  • The paper has been selected as one of the highlights of the articles published in Journal of Physics D: Applied Physics in 2007.
 
Nerve regeneration in Caenorhabditis elegans after femtosecond laser axotomy

Yanik, F., Cinar, H., Cinar, N., Chisholm A., Jin, Y., and Ben-Yakar, A., “Nerve regeneration in Caenorhabditis elegans after femtosecond laser axotomy,” Invited Paper on Nanophotonics by IEEE Journal of Selected Topics in Quantum Electronics, 12 (6), 1283–1291 (2006). icon_pdf 

 
Time evolution and mixing characteristics of hydrogen and ethylene transverse jets in supersonic crossflows

Ben-Yakar, A., Mungal, M. G., and Hanson, R. K., “Time evolution and mixing characteristics of hydrogen and ethylene transverse jets in supersonic crossfows.” Physics of Fluids, 18, 026101 (2006). icon_pdf

 
Neurosurgery: Functional regeneration after laser axotomy

Yanik, F., Cinar, H., Cinar, N., Chisholm A., Jin, Y., and Ben-Yakar, A., “Neurosurgery: Functional regeneration after laser axotomy,” Nature 432, 822 (2004). icon_pdf

  • Commentary article by K. Schmidt, “Micro-scalpel offers unprecedented precision” New Scientist Magazine issue 2492, p. 40-43, 26 March 2005. icon_pdf
  • Supplementary Material icon_pdf     
 
Femtosecond laser ablation properties of borosilicate glass

Ben-Yakar, A. and Byer, R.L., “Femtosecond laser ablation properties of borosilicate glass,” Journal of Applied Physics, 96 (9), 5316 (2004). icon_pdf

 
Morphology of femtosecond laser ablated borosilicate glass surfaces

Ben-Yakar, A., Byer, R.L., Harkin, A., Ashmore, J., Stone, H., Shen, M., and Mazur, E., “Morphology of femtosecond laser ablated borosilicate glass surfaces.” Applied Physics Letters, 83 (15), 3030-3032 (2003). icon_pdf

 
Characterization of expansion tube flows for hypervelocity combustion studies

Ben-Yakar, A. and Hanson, R.K., “Characterization of expansion tube flows for hypervelocity combustion studies,” Journal of Propulsion and Power, 18 (4), 943-952 (2002). icon_pdf

 
Ultrafast-framing Schlieren system for studying the time evolution of jets in supersonic crossflows

Ben-Yakar, A. and Hanson, R.K., “Ultrafast-framing Schlieren system for studying the time evolution of jets in supersonic crossflows,” Experiments in Fluids, 32, 652-666 (2002). icon_pdf

 
Cavity flame-holders for ignition and flame stabilization in scramjets: an overview

Ben-Yakar, A. and Hanson, R.K., “Cavity flame-holders for ignition and flame stabilization in scramjets: an overview,” Journal of Propulsion and Power, 17 (4), 869-877 (2001). icon_pdf

 
Experimental investigation of flame-holding capability of a transverse hydrogen jet in supersonic crossflows

Ben-Yakar, A. and Hanson, R.K., “Experimental investigation of flame-holding capability of a transverse hydrogen jet in supersonic crossflows,” Proceedings of the Combustion Institute, 27, 2173-2180 (1998). icon_pdf

 
Investigation of a solid fuel scramjet combustor

Ben-Yakar, A., Natan, B., and Gany, A., “Investigation of a solid fuel scramjet combustor,” Journal of Propulsion and Power, 14 (4), 447-455 (1998). 

 


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Contact Information

Prof. Adela Ben-Yakar
Phone: 512.475.9280
Email: ben-yakar@mail.utexas.edu

Ben-Yakar Group Offices: ETC 7.113
Phone: 512.471.7342

FemtoLab: ETC 7.106 | Phone: 512.471.7342
Mechanical Engineering Department C2200
University of Texas at Austin, Austin TX 78712

Shipping Address:
204 E. Dean Keeton Street Stop C2200
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